Search results for "Bulk soil"
showing 10 items of 32 documents
The rhizosphere of mycorrhizal plants
2002
Providing that appropriate carbon substrates are available, microbial communities are able to develop a range of activities which are crucial in maintaining a biological balance in soil (Bowen and Rovira 1999), a key issue for the sustainability of either natural ecosystems or agroecosystems (Kennedy and Smith 1995). Soil-borne microbes have a particular microhabitat in which to flourish. In particular, they are bound to the surface of soil particles or found in soil aggregates, while others interact specifically with the plant root system (Glick 1995). The root-soil interface is actually a dynamic changing environment, a microcosm where microorganisms, plant roots and soil constituents int…
Microbial community composition but not diversity changes along succession in arctic sand dunes
2017
The generality of increasing diversity of fungi and bacteria across arctic sand dune succession was tested. Microbial communities were examined by high-throughput sequencing of 16S rRNA genes (bacteria) and internal transcribed spacer (ITS) regions (fungi). We studied four microbial compartments (inside leaf, inside root, rhizosphere and bulk soil) and characterized microbes associated with a single plant species (Deschampsia flexuosa) across two sand dune successional stages (early and late). Bacterial richness increased across succession in bulk soil and leaf endosphere. In contrast, soil fungal richness remained constant while root endosphere fungal richness increased across succession. …
Fungal community assemblage of different soil compartments in mangrove ecosystem
2017
AbstractThe fungal communities of different soil compartments in mangrove ecosystem are poorly studied. We sequenced the internal transcribed spacer (ITS) regions to characterize the fungal communities in Avicennia marina root-associated soils (rhizosphere and pneumatophore) and bulk soil compartments. The rhizosphere but not pneumatophore soil compartment had significantly lower fungal species richness than bulk soil. However, bulk soil fungal diversity (Shannon diversity index) was significantly higher than both pneumatophore and rhizosphere soil compartments. The different soil compartments significantly affected the fungal community composition. Pairwise sample analyses showed that bulk…
Fluorescent pseudomonads harboring type III secretion genes are enriched in the mycorrhizosphere of Medicago truncatula
2011
Type III secretion systems (T3SSs) of Gram-negative bacteria mediate direct interactions with eukaryotic cells. Pseudomonas spp. harboring T3SS genes (T3SS+) were previously shown to be more abundant in the rhizosphere than in bulk soil. To discriminate the contribution of roots and associated arbuscular mycorrhizal fungi (AMF) on the enrichment of T3SS+ fluorescent pseudomonads in the rhizosphere of Medicago truncatula, their frequency was assessed among pseudomonads isolated from mycorrhizal and nonmycorrhizal roots and from bulk soil. T3SS genes were identified by PCR targeting a conserved hrcRST DNA fragment. Polymorphism of hrcRST in T3SS+ isolates was assessed by PCR-restriction fragm…
atzgene expressions during atrazine degradation in the soil drilosphere
2010
One of the various ecosystemic services sustained by soil is pollutant degradation mediated by adapted soil bacteria. The pathways of atrazine biodegradation have been elucidated but in situ expression of the genes involved in atrazine degradation has yet to be demonstrated in soil. Expression of the atzA and atzD genes involved in atrazine dechlorination and s-triazine ring cleavage, respectively, was investigated during in situ degradation of atrazine in the soil drilosphere and bulked samples from two agricultural soils that differed in their ability to mineralize atrazine. Interestingly, expression of the atzA gene, although present in both soils, was not detected. Atrazine mineralizati…
An anthropic soil transformation fingerprinted by REY patterns
2009
Abstract This Focus article deals intentionally with modern soil disturbance in situ . This is of interest to archaeologists as after disturbances, both short- and long-term, pedogenesis (re-)starts obliterating previous signs. Soil modifications induced by human activity may be linked to pedogenetic evidence for disturbance with archaeological evidence for the cultural activities. We contrasted two 750-m 3 soil pedons, an Anthrosol and a Kastanozem, from which the Anthrosol is derived, using 77 descriptors of soil properties which have been utilized in archaeological studies (pedo-morphological, routine laboratory, biochemical, metals and rare earth elements plus yttrium, REY) with the aim…
Effect of carbon source supply and its location on competition between inoculated and established bacterial strains in sterile soil microcosm
1999
The aim of this work was to study how the location of a carbon source and of bacterial cells in soil can enhance the growth of a bacterial inoculum. Studies were performed using irradiated soil and two pairs of strains of Bradyrhizobium japonicum and Pseudomonas fluorescens. For each species, an antibiotic-resistant mutant was used as inoculant and introduced into a sterile soil pre-colonised with its parent strain. The inocula and a glycerol amendment were introduced together or separately into soil using porous microgranules or by spraying a suspension onto the bulk soil. Competition was assessed by plate counts of both inoculant and established populations. Both B. japonicum and P. fluor…
Rapid transformation of inorganic to organic and plant-available phosphorous in soils of a glacier forefield
2012
Abstract Chemical weathering of rocks or sediments is extremely important for the generation of soils, for the evolution of landscape, and as a main source of inorganic nutrients for plant growth and therefore for life. Temporal trends in weathering mechanisms, plant succession and nutrients availability in cold environments can be successfully studied in soil chronosequences along a glacier forefield. In the present paper, this was carried out in the pro-glacial area of Morteratsch. Different forms of phosphorous in the soil, stream and spring water chemistry were investigated. Apatite constitutes the main source of P, but it occurs only as a minor accessory mineral phase in the granitic/g…
Isotope ratios of nonexchangeable hydrogen in soils from different climate zones
2010
Abstract The fractionation of H isotopes in global precipitation leads to a continuous decrease in 2 H concentrations of precipitation with increasing latitude, altitude and continentality. Thus, the local precipitation, soil and ground water used by plants for photosynthesis or consumed during neoformation of pedogenic clay minerals often have a spatially diagnostic δ 2 H value. We hypothesize that the δ 2 H value of isotopically nonexchangeable H in bulk soil (composed of C-bonded H in soil organic matter (SOM) and the nonexchangeable fraction of O-bonded H in pedogenic clay minerals) is correlated with the mean δ 2 H value of local precipitation water at the place and time of biomass pro…
Soil Carbon, Nitrogen and Phosphorus Dynamics as Affected by Solarization Alone or Combined with Organic Amendment
2006
Soil solarization, alone or combined with organic amendment, is an increasingly attractive approach for managing soil-borne plant pathogens in agricultural soils. Even though it consists in a relatively mild heating treatment, the increased soil temperature may strongly affect soil microbial processes and nutrients dynamics. This study aimed to investigate the impact of solarization, either with or without addition of farmyard manure, in soil dynamics of various C, N and P pools. Changes in total C, N and P contents and in some functionally-related labile pools (soil microbial biomass C and N, K2SO4-extractable C and N, basal respiration, KCl-exchangeable ammonium and nitrate, and water-sol…